DisGeNET - a database of gene-disease associations

List of shared variants

Neoplasms, C0027651

Disease: Liver carcinoma

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs20576	TNFRSF10A	0.637	0.400	8	23200707	missense variant	T/G	snv	0.15	0.14	34
rs2279744	MDM2	0.605	0.640	12	68808800	intron variant	T/G	snv		0.31	48
rs2282679	GC	0.645	0.480	4	71742666	intron variant	T/G	snv		0.21	38
rs397507444	MTHFR	0.405	0.880	1	11794407	missense variant	T/G	snv			306
rs7963551	RAD52	0.807	0.160	12	912349	3 prime UTR variant	T/G	snv		0.13	7
rs1065205	SERPINB11 ; SERPINB3	1.000	0.080	18	63655761	missense variant	T/C;G	snv	0.15		2
rs121912666	TP53	0.645	0.360	17	7674872	missense variant	T/C;G	snv	8.0E-06		34
rs121913407	CTNNB1	0.763	0.240	3	41224645	missense variant	T/C;G	snv			12
rs13332	CTSB	0.925	0.120	8	11849072	synonymous variant	T/C;G	snv	3.5E-02; 0.56		6
rs17501292	HOTTIP ; HOXA13	1.000	0.080	7	27201854	non coding transcript exon variant	T/C;G	snv			2
rs39315	CFTR ; WNT2	1.000	0.080	7	117323508	intron variant	T/C;G	snv			2
rs587780073	TP53	0.708	0.400	17	7674262	missense variant	T/C;G	snv			19
rs886039484	TP53	0.641	0.440	17	7674888	missense variant	T/C;G	snv			32
rs1042489	BIRC5	0.851	0.160	17	78224125	3 prime UTR variant	T/C	snv		0.40	5
rs1047972	AURKA	0.716	0.240	20	56386407	missense variant	T/C	snv	0.85	0.84	19
rs1051740	EPHX1	0.592	0.760	1	225831932	missense variant	T/C	snv	0.32	0.27	56
rs1127717	ALDH1L1-AS1 ; ALDH1L1	0.925	0.160	3	126107216	missense variant	T/C	snv	0.18	0.20	3
rs1302103336	CHEK1	0.776	0.120	11	125637491	missense variant	T/C	snv	8.1E-06		12
rs157077	GSTO2	1.000	0.080	10	104278136	intron variant	T/C	snv	0.45	0.53	3
rs1800896	IL19 ; IL10	0.507	0.800	1	206773552	intron variant	T/C	snv		0.41	113
rs187115	CD44	0.695	0.320	11	35154612	intron variant	T/C	snv		0.37	22
rs25487	XRCC1	0.441	0.800	19	43551574	missense variant	T/C	snv	0.68	0.71	205
rs3116496	CD28	0.776	0.160	2	203729789	intron variant	T/C	snv	0.15	0.14	11
rs34612342	MUTYH	0.653	0.400	1	45332803	missense variant	T/C	snv	1.5E-03	1.6E-03	32
rs3798577	ESR1	0.742	0.320	6	152099995	3 prime UTR variant	T/C	snv		0.45	16